The /FixMbr option writes a Windows 7 or Windows Vista-compatible MBR to the system partition. This option does not overwrite the existing partition table. Use this option when you must resolve MBR corruption issues, or when you have to remove non-standard code from the MBR.
The /FixBoot option writes a new boot sector to the system partition by using a boot sector that is compatible with Windows Vista or Windows 7. Use this option if one of the following conditions is true:
The /RebuildBcd option scans all disks for installations that are compatible with Windows Vista or Windows 7. Additionally, this option lets you select the installations that you want to add to the BCD store. Use this option when you must completely rebuild the BCD.